Cannot Boot Server To New Kernel

Jul 8, 2009

We cannot figure out why our dedicated server will not boot to the correct kernel. I've removed all other options from grub.conf but it's still booting to the default CentOS setup.

grub.conf:

Code:
# grub.conf generated by anaconda
#
# Note that you do not have to rerun grub after making changes to this file
# NOTICE: You do not have a /boot partition. This means that
# all kernel and initrd paths are relative to /, eg.
# root (hd0,0)
# kernel /boot/vmlinuz-version ro root=/dev/mapper/ddf1_4c53492020202020808627c300000000378494a900000a28p1
# initrd /boot/initrd-version.img
#boot=/dev/mapper/ddf1_4c53492020202020808627c300000000378494a900000a28
default=0
timeout=5
splashimage=(hd0,0)/boot/grub/splash.xpm.gz
hiddenmenu
title CentOS (2.6.18-028stab062.3)
root (hd0,0)
kernel /boot/vmlinux-2.6.18-028stab062.3 ro root=LABEL=/
initrd /boot/initrd-2.6.18-028stab062.3.img

Code:
uname -r
2.6.18-128.el5

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Server Does Not Boot New Kernel

Jan 8, 2008

on a RHE 3 system I installed a new Kernel. I did update lilo.conf and grub.conf but they are still booting an old kernel: 2.4.21-27.ELsmp. Please have a look at my files below and if you have any idea why please let me know.

lilo.conf:

prompt
timeout=50
default=2.4.21-53.ELsmp
boot=/dev/hda
map=/boot/map
install=/boot/boot.b
message=/boot/message
linear
image=/boot/vmlinuz-2.4.21-53.ELsmp
label=2.4.21-53.ELsmp
initrd=/boot/initrd-2.4.21-53.ELsmp.img
read-only
append="root=/dev/hda3"
image=/boot/vmlinuz-2.4.21-47.ELsmp
label=2.4.21-47.ELsmp
initrd=/boot/initrd-2.4.21-47.ELsmp.img
read-only
append="root=/dev/hda3"
image=/boot/vmlinuz-2.4.21-47.EL
label=2.4.21-47.EL
initrd=/boot/initrd-2.4.21-47.EL.img
read-only
append="root=/dev/hda3"
image=/boot/vmlinuz-2.4.21-27.ELsmp
label=linux
initrd=/boot/initrd-2.4.21-27.ELsmp.img
read-only
append="root=/dev/hda3"
image=/boot/vmlinuz-2.4.21-27.EL
label=linux-up
initrd=/boot/initrd-2.4.21-27.EL.img
read-only
append="root=/dev/hda3"
grub.conf:

Code:
default=0
timeout=10
splashimage=(hd0,0)/grub/splash.xpm.gz
title Red Hat Enterprise Linux ES (2.4.21-53.ELsmp)
root (hd0,0)
kernel /vmlinuz-2.4.21-53.ELsmp ro root=/dev/hda3
initrd /initrd-2.4.21-53.ELsmp.img
title Red Hat Enterprise Linux ES (2.4.21-47.ELsmp)
root (hd0,0)
kernel /vmlinuz-2.4.21-47.ELsmp ro root=/dev/hda3
initrd /initrd-2.4.21-47.ELsmp.img
title Red Hat Enterprise Linux ES (2.4.21-47.EL)
root (hd0,0)
kernel /vmlinuz-2.4.21-47.EL ro root=/dev/hda3
initrd /initrd-2.4.21-47.EL.img
title Red Hat Enterprise Linux ES (2.4.21-27.ELsmp)
root (hd0,0)
kernel /vmlinuz-2.4.21-27.ELsmp ro root=LABEL=/
initrd /initrd-2.4.21-27.ELsmp.img
title Red Hat Enterprise Linux ES-up (2.4.21-27.EL)
root (hd0,0)
kernel /vmlinuz-2.4.21-27.EL ro root=LABEL=/
initrd /initrd-2.4.21-27.EL.img

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Nov 10, 2007

I'm trying to put together a new 1U rackmount server that I'm intending to colocate (my first server of my own). Here are the details:

11-152-087 CHASSIS SUPERMICRO|CSE-512L-260B R
13-182-120 SERVER_MB SUPERMICRO|MBD-PDSML-LN2+
22-144-417 HD 250G|WD 7K 8M SATA2 WD2500JS
19-115-029 CPU INTEL|C2D E6750 2.66G 65N 4M R
20-134-337 MEM 1Gx2|KST KVR667D2E5K2/2G R

The stock CPU fan is obviously too big to sit in a 1U rackmount chassis, but I've got the top off and was just trying to boot up with the OEM fan to make certain everything worked (forgot to order a low-profile fan and heatsink--they're on the way).

Well, I put everything together, and it won't boot. Upon power up, there is nothing sent to the VGA port, and after a second or two, there is a hi-low alarm sound that does not stop that seems to imply the system is overheating (the MB and chassis manuals don't mention this alarm anywhere, but the read "temperature" light on the front is red). The CPU fan runs as well as the case fan, and even if I hold a huge high-velocity home fan over it, it still won't send any signal to the VGA monitor or POST.

I've checked that the power connections are good, the fans are seated properly, the memory contact is good, etc., and all I get is this hi-low chime every time I try to boot up. I think it's either a bad MB or CPU, since I can't imagine that the CPU is overheating with the heat sink and CPU fan.

Perhaps I've screwed something up, but the next issue I have is trying to figure out what could be causing the problem so I know what to return or replace. Is it the CPU? MB? RAM? Power unit? How can I test any of these without buying another set and possibly frying those?

I figured maybe some of you might have some ideas. I've built several computers over the years, but this one has me completely stymied.

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I have set up Windows Small Business Server 2003 and was testing it over the past week. Everything has been going well and yesterday it requested to install an update (not to sure what it was now) and soon after the update was installed a restart was required.

After the server shutdown and tried to restart the system will not restart.

The machine powers up and then I am faced with a blank black screen (no load bar nothing). The monitor led light flashes from green to orange then to a static green light after the Dell splash screen.

I can load up into safe mode although I do not know how to work out what is wrong. I am guessing the update has caused the issue, possibly a boot sector needs repairing. There are no new additions to control panel -> install/remove programs which i believe is where all updates can be uninstalled from.

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[kernel: Kernel BUG At Mm/rmap.c:479] Any Idea What This Is?

Mar 29, 2007

we have one box in hivelocity.net that has been down so many times this month that we were forced to remove links to siteuptime where we were once so proud of having a 99.7% uptime for 3 years in theplanet.

syslog shows that just before crashing, these entries were made:

kernel: kernel BUG at mm/rmap.c:479
kernel: invalid operand:0000 [#1]

dmesg also shows this:

...
Brought up 2 CPUs
zapping low mappings.
checking if image is initramfs... it is
Freeing initrd memory: 482k freed
NET: Registered protocol family 16
PCI: PCI BIOS revision 2.10 entry at 0xf9f20, last bus=1
PCI: Using configuration type 1
mtrr: v2.0 (20020519)
mtrr: your CPUs had inconsistent fixed MTRR settings
mtrr: probably your BIOS does not setup all CPUs.
mtrr: corrected configuration.
...

i've googled these messages and they point to ram problems.

hivelocity.net claims to have done diagnostics on the box and that there were no problems reported.

they said this is a result of a sys configuration problem made by us.

any ideas?

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when i configure vmware it asks at one point for kernel header files. where would i find them to match the current kernel?

i asked at parallels forums but help there is very scarce. i checked openVZ repositories and they dont yet have headers for this version.

what are my options? i have one last windows machine left and want to run it in VMware.

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Apr 29, 2007

Last year I ordered a new server with Centos 4.3 and it had the kernel kernel 2.6.9-34.0.2ELsmp installed. It runned fine and I didn't update any packages since then.

Today I started getting a problem where both mysqld and kswapd0 uses very high amounts of CPU, spiking up to 100% and my memory usage is at 99% all the time. The problem seems exactly the same as the one mentioned in this thread.

In that thread the exact same kernel is said to be insecure and to cause this problem. I also came across a centOS bug that reports this problem with high cpu, mem usage and mysql & kswapd0 consuming all resources.

In the linked thread the person solved the problem by upgrading to kernel 2.6.9-42 using rpms but others recommended a newer kernel or a custom compiled kernel for CentOS.

Apparently when they used yum it said 34.0.2 was the latest kernel.

What should I do to upgrade the kernel, which version should i upgrade to, and where do I get it from? I won't be able to compile a custom kernel and I've only installed basic rpm packages before.

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Apr 14, 2009

I got this weird issue with a server, I have even contacted some server management companies as I ran out of ideas and ran out of things to try and fix it.

Lemme explain.
The server is a core2quad q6600, with 8gb ram. 2 velociraptor 300gb on raid1.

When I set the server up I had to wait on cpanel so I first went in and compiled a grsec kernel, 2.6.24.3 to be exact. Then I installed cpanel and everything else, have done the same exact procedures with countless other servers before, nothing special.

Have had this server around 10 months. It will only run right in the 2.6.24.3-grsec kernel. When you boot another kernel it will first boot very very slow, then when the server comes up everything is very very slow. Then the load will go up to like 100 with nothing special going on in the server. It;s like its loaded down like that just with basic startup functions. You will see things like service_start processes long after startup. Cpanel takes forever to start up if it does. The server is extremely slow and unusable, you are lucky if you can edit grub.conf real quick and set the default kernel back.

It does this on every kernel...Besides the 2.6.24.3-grsec which in that case it boots right up fine and dandy. It acts like a regular server then, performs good.

So any other kernel besides the 2.6.24.3-grsec simply wont work on it. There are no logs in messages, nothing like that. I looked into things that may have been built only for the 2.6.24.3-grsec kernel but couldn't really find anything that should have made such an impact.

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Jul 2, 2008

We have experienced a serious downtime of our server due to a "Kernel Panic" problem. The server stops responding to ping requests. When we accessed the console through IPMI, we saw a "Kernel Panic" error detailed here: [url]and [url]

We are running redhat RHEL 5.1

[root@host~]# uname -a
Linux host.com 2.6.18-92.1.1.el5PAE #1 SMP Thu May 22 09:16:17 EDT 2008 i686 i686 i386 GNU/Linux
[root@host~]#

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Server Goes Down With Kernel Panic

Nov 24, 2007

I have a cpanel server which goes down with a kernel panic.

In the messages files, i could find the below lines.

The kernel in the server is 2.6.9-55.0.12.ELsmp #1 SMP
h/w is 4 cpu Dual Core AMD Opteron(tm) Processor 265

Is this a kernel bug?

If yes , how can i solve it?

=====================================================
Nov 24 06:28:35 xxx kernel: eip: c0156874
Nov 24 06:28:35 xxx kernel: ------------[ cut here ]------------
Nov 24 06:28:35 xxx kernel: kernel BUG at include/asm/spinlock.h:133!
Nov 24 06:28:35 xxx kernel: invalid operand: 0000 [#1]
Nov 24 06:28:35 xxx kernel: SMP
Nov 24 06:28:35 xxx kernel: Modules linked in: md5 ipv6 parport_pc lp parport autofs4 i2c_dev i2c_core ip_conntrack_ftp ip_conntrack iptable_mangle iptable_filter ip_tables dm_mirror dm_mod button battery ac ohci_hcd ehci_hcd shpchp k8_edac edac_mc snd_intel8x0 snd_ac97_codec snd_pcm_oss snd_mixer_oss snd_pcm snd_timer snd_page_alloc snd_mpu401_uart snd_rawmidi snd_seq_device snd soundcore tg3 ext3 jbd sata_nv 3w_xxxx sata_sil libata sd_mod scsi_mod
Nov 24 06:28:35 xxx kernel: CPU: 2
Nov 24 06:28:35 xxx kernel: EIP: 0060:[<c02d51fb>] Not tainted VLI
Nov 24 06:28:35 xxx kernel: EFLAGS: 00010216 (2.6.9-55.0.12.ELsmp)
Nov 24 06:28:35 xxx kernel: EIP is at _spin_lock+0x1c/0x34
Nov 24 06:28:35 xxx kernel: eax: c02e8cb4 ebx: c0445164 ecx: e9147e5c edx: c0156874
Nov 24 06:28:35 xxx kernel: esi: c0445160 edi: 00000007 ebp: 00000000 esp: e9147e60
Nov 24 06:28:35 xxx kernel: ds: 007b es: 007b ss: 0068
Nov 24 06:28:35 xxx kernel: Process exim (pid: 8603, threadinfo=e9147000 task=f7a25330)
Nov 24 06:28:35 xxx kernel: Stack: 00000001 c0156874 00000000 fff8b500 10000000 f4f9922c c014e3f4 098a0004
Nov 24 06:28:35 xxx kernel: 00000001 00000002 fff8b500 f2f46684 00000000 c014e4a9 00000001 10000000
Nov 24 06:28:35 xxx kernel: 098a0004 f4f9922c f2f46640 00000002 fff8b500 d726e260 098a0004 c014ede1
Nov 24 06:28:35 xxx kernel: Call Trace:
Nov 24 06:28:35 xxx kernel: [<c0156874>] valid_swaphandles+0x42/0x6d
Nov 24 06:28:35 xxx kernel: [<c014e3f4>] swapin_readahead+0x18/0x57
Nov 24 06:28:35 xxx kernel: [<c014e4a9>] do_swap_page+0x76/0x2ea
Nov 24 06:28:35 xxx kernel: [<c014ede1>] handle_mm_fault+0x116/0x193
Nov 24 06:28:35 xxx kernel: [<c011b01b>] do_page_fault+0x1ae/0x5c6
Nov 24 06:28:35 xxx kernel: [<c012052d>] autoremove_wake_function+0x0/0x2d
Nov 24 06:28:35 xxx kernel: [<c0173889>] dnotify_parent+0x1b/0x6e
Nov 24 06:28:35 xxx kernel: [<c015b56a>] vfs_read+0xda/0xe2
Nov 24 06:28:35 xxx kernel: [<c015b75b>] sys_read+0x3c/0x62
Nov 24 06:28:35 xxx kernel: [<c011ae6d>] do_page_fault+0x0/0x5c6
Nov 24 06:28:35 xxx kernel: [<c02d719f>] error_code+0x2f/0x38
Nov 24 06:28:35 xxx kernel: Code: 00 75 09 f0 81 02 00 00 00 01 30 c9 89 c8 c3 53 89 c3 81 78 04 ad 4e ad de 74 18 ff 74 24 04 68 b4 8c 2e c0 e8 f9 d6 e4 ff 58 5a <0f> 0b 85 00 15 7d 2e c0 f0 fe 0b 79 09 f3 90 80 3b 00 7e f9 eb
Nov 24 06:28:35 xxx kernel: <0>Fatal exception: panic in 5 seconds
=====================================================

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Apr 6, 2009

Is it possible to upgrade a kernel on a dedicated server? I have a dedicated at Server.lu.

I opened a ticket with them, it was open for about a month with no reply.

How can I tell if GRUB or LILO is on the server somewhere?

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Server Crashed: Kernel Panic

Mar 23, 2007

Today my server just crashed instantly... It was running fine with a load of 0.12 but then it went down all the sudden. After a reboot I checked the /var/log/messages file and saw this:

Code:
Mar 23 15:57:00 alpha kernel: Unable to handle kernel NULL pointer dereference at virtual address 00000020
Mar 23 15:57:00 alpha kernel: printing eip:
Mar 23 15:57:00 alpha kernel: c017292b
Mar 23 15:57:00 alpha kernel: *pde = 2085d001
Mar 23 15:57:00 alpha kernel: Oops: 0000 [#1]
Mar 23 15:57:00 alpha kernel: SMP
Mar 23 15:57:00 alpha kernel: Modules linked in: ipt_TOS iptable_mangle ip_conntrack_ftp ip_conntrack_irc ipt_LOG ipt_limit ipt_multiport ipt_state ip_conntr
ack ipt_owner ipt_REJECT iptable_filter ip_tables autofs4 i2c_dev i2c_core sunrpc md5 ipv6 dm_mirror dm_mod button battery ac uhci_hcd ehci_hcd e1000 floppy
ext3 jbd ata_piix libata sd_mod scsi_mod
Mar 23 15:57:00 alpha kernel: CPU: 0
Mar 23 15:57:00 alpha kernel: EIP: 0060:[<c017292b>] Not tainted VLI
Mar 23 15:57:00 alpha kernel: EFLAGS: 00010246 (2.6.9-42.0.3.ELsmp)
Mar 23 15:57:00 alpha kernel: EIP is at dnotify_flush+0xe/0x70
Mar 23 15:57:00 alpha kernel: eax: c0446c40 ebx: ca05dd80 ecx: 0046ef00 edx: f1d95300
Mar 23 15:57:00 alpha kernel: esi: 00000000 edi: ca05dd80 ebp: f1d95300 esp: eb3f3fa0
Mar 23 15:57:00 alpha kernel: ds: 007b es: 007b ss: 0068
Mar 23 15:57:00 alpha kernel: Process httpd (pid: 28057, threadinfo=eb3f3000 task=efaf03b0)
Mar 23 15:57:00 alpha kernel: Stack: ca05dd80 00000220 f1d95300 eb3f3000 c015a7e5 0000020f bff65b64 bff65af0
Mar 23 15:57:00 alpha kernel: c02d47cb 0000020f 0046eff4 08cd4e6c bff65b64 bff65af0 bff615b8 00000006
Mar 23 15:57:00 alpha kernel: c02d007b 0000007b 00000006 0032a7a2 00000073 00000246 bff61598 0000007b
Mar 23 15:57:00 alpha kernel: Call Trace:
Mar 23 15:57:00 alpha kernel: [<c015a7e5>] filp_close+0x49/0x5f
Mar 23 15:57:00 alpha kernel: [<c02d47cb>] syscall_call+0x7/0xb
Mar 23 15:57:00 alpha kernel: [<c02d007b>] packet_rcv+0x17e/0x307
Mar 23 15:57:00 alpha kernel: Code: 00 89 c3 85 d2 74 0e 8b 42 04 8b 12 25 ff ff ff 7f 09 c1 eb ee 89 8b 34 01 00 00 5b c3 55 89 d5 57 89 c7 56 53 8b 40 08 8
b 70 10 <0f> b7 46 20 25 00 f0 00 00 3d 00 40 00 00 75 4d 8d 46 68 e8 fb
Mar 23 15:57:00 alpha kernel: <0>Fatal exception: panic in 5 seconds
Mar 23 16:06:46 alpha syslogd 1.4.1: restart.
So it seems like httpd crashed my server? I checked the Apache error_log and noticed lines like these:

Code:
*** glibc detected *** free(): invalid pointer: 0x08872c98 ***
[Fri Mar 23 15:57:03 2007] [error] [client x.x.x.x] Premature end of script headers: /home/user/public_html/forum/index.php
[Fri Mar 23 15:57:03 2007] [error] [client x.x.x.x] File does not exist: /home/user/public_html/500.shtml
When I look at the whole error_log it seems like such errors appear frequently and for different websites and PHP applications. This isn't the only glibc error, there's also stuff like "*** glibc detected *** corrupted double-linked list: 0x088e0bb8 ***". I have recently installed eAccelerator and searched the web: I'm not the only one who has such problems with eAccelerator. Do you think these glibc errors may have caused the server to crash?

Also, lately I noticed a lot of lines like these in the /var/log/messages file:

Code:
Mar 23 15:47:45 alpha kernel: post_create: setxattr failed, rc=122 (dev=sda7 ino=4318565)
and

Code:
Mar 23 15:50:56 alpha ntpd[2958]: sendto(66.111.46.200): Operation not permitted
I've done some Google'ing on the first error and it seems like someone with the same error got it fixed by running a filesystem check... By the way /dev/sda7 is my /home directory. But in order to run a filesystem check I need to disable all services and unmount /home? That's kind of a pain in the ***... In general, how long do you think it takes to run a filesystem check? Here's information about my /home partition:

Code:
/dev/sda7 198G 71G 118G 38% /home

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Jun 10 14:14:54 server kernel: printk: 59 messages suppressed.
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Using Centos / Cpanel

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root@server [~]# sysctl net.ipv4.netfilter.ip_conntrack_max
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-- or --
/dev/sda1 - first sector of boot partition

My partition for /sda1/ is /boot 100MB

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Mysql Not Starting At Boot

Jul 3, 2007

am running CentOs with whm/cpanel and am whenever i reboot my server all sites that required mysql show erros ( can't connect ) it resolves by manually in the web host manager restarting mysql.

I already tried

chkconfig mysql on

then rebooted and the error persists,

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Boot From A PCI SATA Card

Feb 4, 2007

I have an old server with only IDE and SCSI connectors on the mobo.

However, I have only SATA drives and no IDE available. I consider to buy an entry level PCI SATA adapter card. What do you think ? Can I install and boot Linux directly from it?

There is no raid involved.

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Linux And Windows Boot

Jun 9, 2007

I have insalled windows in hda and linux on hdb, but after I installed grub loader it is coming to grub prompt as this:

grub>

someone suggested to do the follwing comand
root (hd0,0)
kernel /boot/vmlinux....
boot

I am not sure about this this line:

root (hd0,0)

What exactly trying to do?

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